PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000022.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 201aa    MW: 22277.2 Da    PI: 9.8761
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000022.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-1677128256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                              +ykGVr+++ +g+++AeIrdp   + + +r +lg++  +e+Aa a+++ + kl+g+
  Itr_sc000022.1_g00005.1  77 RYKGVRRRP-WGKFAAEIRDP---NrRGARLWLGTYERPEDAALAYDREAFKLRGA 128
                              7********.**********9...4334*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-3277141IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2277136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-2977136IPR001471AP2/ERF domain
CDDcd000181.64E-2677137No hitNo description
PROSITE profilePS5103223.44677135IPR001471AP2/ERF domain
PfamPF008474.9E-1177127IPR001471AP2/ERF domain
PRINTSPR003679.2E-127889IPR001471AP2/ERF domain
PRINTSPR003679.2E-12117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MESEFDFAFL DSLQQHLLDD SDFPAIFAEI DQCGNSSAVI GGDHDSAGGS PESWEVQKAS  60
GAAREECSPL PPRDWRRYKG VRRRPWGKFA AEIRDPNRRG ARLWLGTYER PEDAALAYDR  120
EAFKLRGARA LLNFPHLIGS NVPAPVRVKP RRRALPKASS PASLSTESGI GAPKRRKISI  180
INSLAAKVNL DRVSMFDMLT S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2776140468ATERF1
3gcc_A2e-2776140468ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010325364.13e-55PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K12e-38ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLK4AYX23e-55K4AYX2_SOLLC; Uncharacterized protein
STRINGSolyc01g090310.2.18e-55(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-33ethylene-responsive element binding factor 13